Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KAMHCOIE_23 | 345029 | 346234 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| KAMHCOIE_34 | 216915 | 217649 | ErmG | ARO:3000522 | ErmG | 98.36 | 100.00 | L42817.1 |
| KAMHCOIE_45 | 197501 | 199475 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KAMHCOIE_45 | 197501 | 199426 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| KAMHCOIE_34 | 216915 | 217649 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KAMHCOIE_23 | 344495 | 345004 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| KAMHCOIE_45 | 197504 | 199426 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| KAMHCOIE_23 | 345032 | 346234 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| KAMHCOIE_34 | 216915 | 217646 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 98.77 | 100.00 | WP_063844791.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KAMHCOIE_1 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_2 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_3 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_4 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_5 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_6 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_7 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_8 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_9 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_10 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_11 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_12 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_13 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_14 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_15 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_16 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_17 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_18 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_19 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_20 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_21 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_22 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_23 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_24 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_25 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_26 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_27 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_28 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_29 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_30 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_31 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_32 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_33 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_34 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_35 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_36 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_37 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_38 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_39 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_40 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_41 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_42 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_43 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_44 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_45 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_46 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_47 | 1.0 | 0.0 | 1.0 |
| KAMHCOIE_48 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_49 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_53 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_54 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_55 | 0.0 | 1.0 | 0.0 |
| KAMHCOIE_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)