Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMMCGOHE_78 | 53745 | 54560 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| AMMCGOHE_24 | 1132 | 3057 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| AMMCGOHE_64 | 475 | 2025 | tet(Q) | ARO:3000191 | tet(Q) | 92.99 | 78.54 | Z21523.1 |
| AMMCGOHE_24 | 3 | 845 | ErmF | ARO:3000498 | ErmF | 98.50 | 105.26 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AMMCGOHE_78 | 53745 | 54560 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| AMMCGOHE_24 | 45 | 845 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMMCGOHE_78 | 53748 | 54560 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| AMMCGOHE_24 | 45 | 842 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| AMMCGOHE_64 | 529 | 2025 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 95.79 | 74.88 | WP_063856407.1 |
| AMMCGOHE_24 | 1132 | 3054 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AMMCGOHE_12 | 266196 | 267776 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AMMCGOHE_75 | 1900 | 2480 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMMCGOHE_1 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_2 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_3 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_4 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_5 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_6 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_7 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_8 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_9 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_10 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_11 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_12 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_13 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_14 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_15 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_16 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_17 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_18 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_19 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_20 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_21 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_22 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_23 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_24 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_25 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_26 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_27 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_28 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_29 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_30 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_31 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_32 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_33 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_34 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_35 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_36 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_37 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_38 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_39 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_40 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_41 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_42 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_43 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_44 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_45 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_46 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_47 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_48 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_49 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_50 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_51 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_52 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_53 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_54 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_55 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_56 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_57 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_58 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_59 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_60 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_61 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_62 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_63 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_64 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_65 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_66 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_67 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_68 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_69 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_70 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_71 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_72 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_73 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_74 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_75 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_76 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_77 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_78 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_79 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_80 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_81 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_82 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_83 | 0.0 | 1.0 | 0.0 |
| AMMCGOHE_84 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_85 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_86 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_87 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_88 | 1.0 | 0.0 | 1.0 |
| AMMCGOHE_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMMCGOHE_67 | 151359 | 160972 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)