Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMCNGKPK_15 | 16663 | 17565 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
| EMCNGKPK_27 | 1150 | 3075 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| EMCNGKPK_27 | 3 | 863 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.52 | M17124.1 |
| EMCNGKPK_38 | 447 | 1724 | tet(Q) | ARO:3000191 | tet(Q) | 95.42 | 64.69 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EMCNGKPK_15 | 16663 | 17565 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| EMCNGKPK_27 | 63 | 863 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMCNGKPK_15 | 16666 | 17565 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| EMCNGKPK_27 | 63 | 860 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| EMCNGKPK_27 | 1150 | 3072 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| EMCNGKPK_38 | 426 | 1691 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 98.34 | 65.83 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EMCNGKPK_54 | 1741 | 2321 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMCNGKPK_1 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_2 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_3 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_4 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_5 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_6 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_7 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_8 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_9 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_10 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_11 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_12 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_13 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_14 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_15 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_16 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_17 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_18 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_19 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_20 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_21 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_22 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_23 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_24 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_25 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_26 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_27 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_28 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_29 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_30 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_31 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_32 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_33 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_34 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_35 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_36 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_37 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_38 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_39 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_40 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_41 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_42 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_43 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_44 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_45 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_46 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_47 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_48 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_49 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_50 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_51 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_52 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_53 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_54 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_55 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_56 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_57 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_58 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_59 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_60 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_61 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_62 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_63 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_64 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_65 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_66 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_67 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_68 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_69 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_70 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_71 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_72 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_73 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_74 | 1.0 | 0.0 | 1.0 |
| EMCNGKPK_75 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_78 | 0.0 | 1.0 | 0.0 |
| EMCNGKPK_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMCNGKPK_78 | 11625 | 20981 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)