Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DLNILPHP_5 | 186546 | 187346 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| DLNILPHP_12 | 104482 | 106407 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DLNILPHP_5 | 186546 | 187346 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DLNILPHP_12 | 104482 | 106407 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DLNILPHP_5 | 186546 | 187343 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DLNILPHP_12 | 104482 | 106404 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DLNILPHP_53 | 1799 | 2379 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DLNILPHP_1 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_2 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_3 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_4 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_5 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_6 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_7 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_8 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_9 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_10 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_11 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_12 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_13 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_14 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_15 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_16 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_17 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_18 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_19 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_20 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_21 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_22 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_23 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_24 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_25 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_26 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_27 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_28 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_29 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_30 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_31 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_32 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_33 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_34 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_35 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_36 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_37 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_38 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_39 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_40 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_41 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_42 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_43 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_44 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_45 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_46 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_47 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_48 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_49 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_51 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_52 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_53 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_54 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_55 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_56 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_57 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_58 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_59 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_61 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_63 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_64 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_65 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_66 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_67 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_68 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_69 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_70 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_71 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_72 | 1.0 | 0.0 | 1.0 |
| DLNILPHP_76 | 0.0 | 1.0 | 0.0 |
| DLNILPHP_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DLNILPHP_19 | 57627 | 65171 | False | Siphoviridae | VOG6488, |
| DLNILPHP_45 | 26874 | 34286 | False | Unknown | VOG0226, |
Phigaro v2.4.0 (Database: Jan. 2024 release)