Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALDFIGO_6 | 22190 | 24109 | tet(O) | ARO:3000190 | tet(O) | 99.22 | 100.00 | M18896.2 |
| JALDFIGO_6 | 20919 | 22139 | tet(40) | ARO:3000567 | tet(40) | 99.51 | 100.00 | AM419751.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JALDFIGO_6 | 20919 | 22139 | tet(40) | Doxycycline, Tetracycline | 99.84 | 100.00 | AM419751 |
| JALDFIGO_6 | 22190 | 24109 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALDFIGO_6 | 20922 | 22139 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_015573055.1 |
| JALDFIGO_6 | 22193 | 24109 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.53 | 100.00 | WP_012669445.1 |
| JALDFIGO_6 | 4891 | 5091 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JALDFIGO_1 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_2 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_3 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_4 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_5 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_6 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_7 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_8 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_9 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_10 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_11 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_12 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_13 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_14 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_15 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_16 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_17 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_18 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_19 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_20 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_21 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_22 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_23 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_24 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_25 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_26 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_27 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_28 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_29 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_30 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_31 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_32 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_33 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_34 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_35 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_36 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_37 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_38 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_39 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_40 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_41 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_42 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_43 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_44 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_45 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_46 | 1.0 | 0.0 | 1.0 |
| JALDFIGO_51 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_52 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_53 | 0.0 | 1.0 | 0.0 |
| JALDFIGO_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JALDFIGO_1 | 130967 | 137843 | False | Unknown | VOG1384, |
| JALDFIGO_1 | 141922 | 167895 | False | Myoviridae | VOG4618, |
Phigaro v2.4.0 (Database: Jan. 2024 release)