Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PEMBJLGJ_1 | 536073 | 538047 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PEMBJLGJ_46 | 1119 | 1919 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PEMBJLGJ_1 | 536073 | 537998 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PEMBJLGJ_46 | 1119 | 1919 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PEMBJLGJ_1 | 536076 | 537998 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PEMBJLGJ_46 | 1122 | 1919 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PEMBJLGJ_1 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_2 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_3 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_4 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_5 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_6 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_7 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_8 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_9 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_10 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_11 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_12 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_13 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_14 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_15 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_16 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_17 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_18 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_19 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_20 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_21 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_22 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_23 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_24 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_25 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_26 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_27 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_28 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_29 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_30 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_31 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_32 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_33 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_34 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_35 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_36 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_37 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_38 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_39 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_40 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_41 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_42 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_43 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_45 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_46 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_48 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_49 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_50 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_51 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_52 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_53 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_54 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_55 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_56 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_57 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_58 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_59 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_60 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_61 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_62 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_63 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_64 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_65 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_66 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_67 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_68 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_69 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_70 | 1.0 | 0.0 | 1.0 |
| PEMBJLGJ_78 | 0.0 | 1.0 | 0.0 |
| PEMBJLGJ_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PEMBJLGJ_78 | 240731 | 252956 | False | Unknown | VOG5096, |
Phigaro v2.4.0 (Database: Jan. 2024 release)