Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MOHCOMOB_36 | 3441 | 4241 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| MOHCOMOB_34 | 3282 | 5256 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MOHCOMOB_34 | 3330 | 5255 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| MOHCOMOB_36 | 3441 | 4241 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MOHCOMOB_34 | 3330 | 5252 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| MOHCOMOB_36 | 3444 | 4241 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MOHCOMOB_17 | 48286 | 49866 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MOHCOMOB_1 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_2 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_3 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_4 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_5 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_6 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_7 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_8 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_9 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_10 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_11 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_12 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_13 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_14 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_15 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_16 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_17 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_18 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_19 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_20 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_21 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_22 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_23 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_24 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_25 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_26 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_27 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_28 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_29 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_30 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_31 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_32 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_33 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_34 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_35 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_36 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_37 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_38 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_39 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_40 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_41 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_42 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_43 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_44 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_45 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_46 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_47 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_48 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_49 | 1.0 | 0.0 | 1.0 |
| MOHCOMOB_51 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_52 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_53 | 0.0 | 1.0 | 0.0 |
| MOHCOMOB_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MOHCOMOB_25 | 21745 | 24315 | False | Siphoviridae | VOG2703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)