Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPMLADIA_131 | 109232 | 111157 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| IPMLADIA_122 | 9780 | 10580 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| IPMLADIA_122 | 7568 | 9493 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPMLADIA_92 | 127 | 992 | ant(6)-Ia | Streptomycin | 99.88 | 99.88 | KF864551 |
| IPMLADIA_131 | 109232 | 111157 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IPMLADIA_122 | 9780 | 10580 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPMLADIA_92 | 127 | 888 | aadE | aminoglycoside 6-adenylyltransferase AadE | PARTIALX | 100.00 | 88.19 | WP_001255868.1 |
| IPMLADIA_131 | 109235 | 111157 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IPMLADIA_122 | 9783 | 10580 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| IPMLADIA_122 | 7571 | 9493 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPMLADIA_35 | 39735 | 38605 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.80 | 69.17 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPMLADIA_1 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_2 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_3 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_4 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_5 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_6 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_7 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_8 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_9 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_10 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_11 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_12 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_13 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_14 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_15 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_16 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_17 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_18 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_19 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_20 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_21 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_22 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_23 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_24 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_25 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_26 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_27 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_28 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_29 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_30 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_35 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_46 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_49 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_50 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_51 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_52 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_53 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_54 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_55 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_56 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_57 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_58 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_59 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_60 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_61 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_62 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_63 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_64 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_65 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_66 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_67 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_68 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_69 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_70 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_71 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_72 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_73 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_74 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_75 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_76 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_77 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_78 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_79 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_80 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_81 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_82 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_83 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_84 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_85 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_86 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_87 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_88 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_89 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_90 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_91 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_92 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_93 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_94 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_95 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_96 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_97 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_98 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_99 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_100 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_101 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_102 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_103 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_104 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_105 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_106 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_107 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_108 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_109 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_110 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_111 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_112 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_113 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_114 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_115 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_116 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_117 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_118 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_119 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_120 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_121 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_122 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_123 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_124 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_125 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_126 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_127 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_128 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_129 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_130 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_131 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_132 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_133 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_134 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_136 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_137 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_138 | 0.0 | 1.0 | 0.0 |
| IPMLADIA_139 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_140 | 1.0 | 0.0 | 1.0 |
| IPMLADIA_141 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IPMLADIA_13 | 15974 | 26941 | False | Siphoviridae | VOG2124, |
| IPMLADIA_24 | 66289 | 71486 | False | Myoviridae | VOG4552, |
| IPMLADIA_98 | 28672 | 34732 | False | Unknown | VOG7407, |
Phigaro v2.4.0 (Database: Jan. 2024 release)