Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FKKJKPPD_5 | 31705 | 32856 | tufA | 0.0 | elongation factor Tu | 86.20 | 97.21 | AHM69299 |
| FKKJKPPD_49 | 8627 | 7758 | pdxS | 3.53e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| FKKJKPPD_45 | 33896 | 34672 | CodY | 2.47e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| FKKJKPPD_45 | 33896 | 34672 | codY | 6.98e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| FKKJKPPD_17 | 866 | 1435 | ClpP | 1.68e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| FKKJKPPD_67 | 49903 | 49511 | spxA1 | 7.84e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| FKKJKPPD_67 | 49903 | 49511 | spx | 1.70e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| FKKJKPPD_7 | 32768 | 32526 | SpoVG | 7.78e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| FKKJKPPD_37 | 12130 | 11933 | CspA | 2.01e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| FKKJKPPD_42 | 6129 | 5935 | CspD | 2.75e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| FKKJKPPD_42 | 6129 | 5932 | CspB | 1.85e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| FKKJKPPD_37 | 12130 | 11936 | CspR | 3.73e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FKKJKPPD_1 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_2 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_3 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_4 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_5 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_6 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_7 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_8 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_9 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_10 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_11 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_12 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_13 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_14 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_15 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_16 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_17 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_18 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_19 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_20 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_21 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_22 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_23 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_24 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_25 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_26 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_27 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_28 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_29 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_30 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_31 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_32 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_33 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_34 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_35 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_36 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_37 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_38 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_39 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_40 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_41 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_42 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_43 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_44 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_45 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_46 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_47 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_48 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_49 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_50 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_51 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_52 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_53 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_54 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_55 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_56 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_57 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_58 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_59 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_61 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_62 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_63 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_64 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_65 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_66 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_67 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_68 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_69 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_70 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_71 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_72 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_73 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_74 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_75 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_76 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_77 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_78 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_79 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_80 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_82 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_83 | 1.0 | 0.0 | 1.0 |
| FKKJKPPD_84 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_85 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_87 | 0.0 | 1.0 | 0.0 |
| FKKJKPPD_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)