Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 8 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DPDJPIJJ_8 | 41547 | 40396 | tufA | 0.0 | elongation factor Tu | 86.72 | 97.21 | AHM69299 |
| DPDJPIJJ_51 | 7018 | 6149 | pdxS | 3.08e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| DPDJPIJJ_49 | 33920 | 34696 | CodY | 2.47e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| DPDJPIJJ_49 | 33920 | 34696 | codY | 6.99e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| DPDJPIJJ_24 | 890 | 1459 | ClpP | 1.68e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| DPDJPIJJ_71 | 50043 | 49651 | spxA1 | 7.77e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| DPDJPIJJ_71 | 50043 | 49651 | spx | 1.68e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| DPDJPIJJ_13 | 18055 | 18297 | SpoVG | 1.95e-39 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| DPDJPIJJ_39 | 7011 | 7208 | CspA | 2.06e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| DPDJPIJJ_27 | 6154 | 5960 | CspD | 2.74e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| DPDJPIJJ_27 | 6154 | 5957 | CspB | 1.84e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| DPDJPIJJ_39 | 7011 | 7205 | CspR | 3.82e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPDJPIJJ_1 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_2 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_7 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_8 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_9 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_10 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_11 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_12 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_13 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_14 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_15 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_16 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_17 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_18 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_19 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_20 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_21 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_22 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_23 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_24 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_25 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_26 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_27 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_28 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_29 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_30 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_31 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_32 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_33 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_34 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_35 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_36 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_37 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_38 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_39 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_40 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_41 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_42 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_43 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_44 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_45 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_46 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_47 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_48 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_49 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_50 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_51 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_52 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_53 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_54 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_55 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_56 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_57 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_58 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_59 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_60 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_61 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_62 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_63 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_64 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_65 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_66 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_67 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_68 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_69 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_70 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_71 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_72 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_73 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_74 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_75 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_76 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_77 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_78 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_79 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_80 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_81 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_82 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_83 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_85 | 1.0 | 0.0 | 1.0 |
| DPDJPIJJ_86 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_87 | 0.0 | 1.0 | 0.0 |
| DPDJPIJJ_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)