Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LINGGNFA_12 | 320811 | 322736 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LINGGNFA_45 | 234455 | 235660 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LINGGNFA_69 | 38420 | 39310 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LINGGNFA_12 | 320811 | 322736 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LINGGNFA_12 | 320814 | 322736 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LINGGNFA_45 | 234455 | 235657 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LINGGNFA_45 | 235685 | 236194 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| LINGGNFA_69 | 38420 | 39307 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LINGGNFA_1 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_2 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_3 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_4 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_5 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_6 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_7 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_8 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_9 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_10 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_11 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_12 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_13 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_14 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_15 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_16 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_17 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_18 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_19 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_20 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_21 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_22 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_23 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_24 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_25 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_26 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_27 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_28 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_29 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_30 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_31 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_32 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_33 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_34 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_35 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_36 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_37 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_38 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_39 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_40 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_41 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_42 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_43 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_45 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_46 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_47 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_48 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_49 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_50 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_51 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_52 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_53 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_54 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_55 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_56 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_57 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_58 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_59 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_60 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_61 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_62 | 1.0 | 0.0 | 1.0 |
| LINGGNFA_67 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_69 | 0.0 | 1.0 | 0.0 |
| LINGGNFA_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LINGGNFA_3 | 24882 | 36162 | False | Siphoviridae | VOG0749, |
| LINGGNFA_6 | 83669 | 98497 | False | Siphoviridae | VOG0322, |
Phigaro v2.4.0 (Database: Jan. 2024 release)