Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJPHLNLP_39 | 21141 | 21941 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NJPHLNLP_39 | 21141 | 21941 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NJPHLNLP_39 | 21144 | 21941 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NJPHLNLP_63 | 1886 | 2565 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJPHLNLP_1 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_2 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_3 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_4 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_5 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_6 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_7 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_8 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_9 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_10 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_11 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_12 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_13 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_14 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_15 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_16 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_17 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_18 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_19 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_20 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_21 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_22 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_23 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_24 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_25 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_26 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_27 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_28 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_29 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_30 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_31 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_32 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_33 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_34 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_35 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_36 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_37 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_38 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_39 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_40 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_41 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_42 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_43 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_44 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_45 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_46 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_47 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_48 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_49 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_50 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_51 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_52 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_53 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_54 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_55 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_56 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_57 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_58 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_59 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_60 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_61 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_62 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_63 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_64 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_65 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_66 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_67 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_68 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_70 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_71 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_73 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_74 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_75 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_78 | 0.0 | 1.0 | 0.0 |
| NJPHLNLP_80 | 1.0 | 0.0 | 1.0 |
| NJPHLNLP_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJPHLNLP_10 | 8675 | 21073 | False | Unknown | VOG1198, |
| NJPHLNLP_89 | 59393 | 66762 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)