Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDCGDFEL_4 | 156886 | 158823 | tet(W/N/W) | ARO:3004442 | tet(W/N/W) | 80.09 | 100.94 | KU736867.1 |
| LDCGDFEL_6 | 50917 | 54477 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDCGDFEL_4 | 156886 | 158799 | tet(W/N/W) | tetracycline resistance ribosomal protection mosaic protein Tet(W/N/W) | BLASTX | 80.09 | 99.84 | WP_122634437.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDCGDFEL_1 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_2 | 1.0 | 0.0 | 1.0 |
| LDCGDFEL_3 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_4 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_5 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_6 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_7 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_8 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_9 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_10 | 0.0 | 1.0 | 0.0 |
| LDCGDFEL_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDCGDFEL_1 | 462411 | 469042 | False | Siphoviridae | VOG2593, VOG5850, VOG3602, VOG6857, VOG3287, VOG4791, VOG0982, VOG0226 |
Phigaro v2.4.0 (Database: Jan. 2024 release)