Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMKKIAHF_50 | 19294 | 20109 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| IMKKIAHF_10 | 9707 | 11681 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| IMKKIAHF_71 | 1190 | 1990 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| IMKKIAHF_74 | 473 | 1297 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IMKKIAHF_74 | 473 | 1297 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| IMKKIAHF_50 | 19294 | 20109 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| IMKKIAHF_10 | 9707 | 11632 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| IMKKIAHF_71 | 1190 | 1990 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMKKIAHF_74 | 473 | 1294 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| IMKKIAHF_50 | 19294 | 20106 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| IMKKIAHF_10 | 9710 | 11632 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| IMKKIAHF_71 | 1190 | 1987 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMKKIAHF_12 | 79782 | 81362 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IMKKIAHF_66 | 2219 | 2799 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMKKIAHF_1 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_2 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_3 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_4 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_5 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_6 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_7 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_8 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_9 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_10 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_11 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_12 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_13 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_14 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_15 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_16 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_17 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_18 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_19 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_20 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_21 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_22 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_23 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_24 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_25 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_26 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_27 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_28 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_29 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_30 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_31 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_32 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_33 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_34 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_35 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_36 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_37 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_38 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_39 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_40 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_41 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_42 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_43 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_44 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_45 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_46 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_47 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_48 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_49 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_50 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_51 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_52 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_53 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_54 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_55 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_56 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_57 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_58 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_59 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_60 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_61 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_62 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_63 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_64 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_65 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_66 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_67 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_68 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_69 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_70 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_71 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_72 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_73 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_74 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_75 | 1.0 | 0.0 | 1.0 |
| IMKKIAHF_78 | 0.0 | 1.0 | 0.0 |
| IMKKIAHF_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)