Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDDKOKPE_31 | 74183 | 75892 | tet(W) | ARO:3000194 | tet(W) | 98.19 | 89.05 | AJ222769.3 |
| DDDKOKPE_28 | 69827 | 73387 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.40 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDDKOKPE_31 | 74183 | 76101 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.91 | 99.95 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDDKOKPE_31 | 74183 | 75841 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | PARTIALX | 99.64 | 86.54 | WP_033493020.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDDKOKPE_1 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_2 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_3 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_4 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_5 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_6 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_7 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_8 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_9 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_10 | 1.0 | 0.0 | 1.0 |
| DDDKOKPE_11 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_12 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_13 | 1.0 | 0.0 | 1.0 |
| DDDKOKPE_14 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_15 | 1.0 | 0.0 | 1.0 |
| DDDKOKPE_16 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_17 | 1.0 | 0.0 | 1.0 |
| DDDKOKPE_19 | 1.0 | 0.0 | 1.0 |
| DDDKOKPE_21 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_22 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_23 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_24 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_26 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_27 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_28 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_29 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_30 | 0.0 | 1.0 | 0.0 |
| DDDKOKPE_31 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDDKOKPE_1 | 433575 | 450161 | False | Siphoviridae | VOG1521, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4553, VOG4553, VOG5504, VOG1581, VOG4589, VOG1154, VOG4557, VOG4545, VOG2624 |
| DDDKOKPE_7 | 14691 | 27134 | False | Siphoviridae | VOG4319, VOG4555, VOG2894, VOG0720, VOG5101, VOG2043, VOG2038, VOG4559, VOG2902, VOG8722, VOG5733, VOG1243 |
| DDDKOKPE_27 | 46223 | 57008 | False | Siphoviridae | VOG4556, VOG4568, VOG4553, VOG5587, VOG5589, VOG5588, VOG5793, VOG4545, VOG9569, VOG9570 |
Phigaro v2.4.0 (Database: Jan. 2024 release)