Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MIDHCGJL_8 | 75489 | 77414 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| MIDHCGJL_23 | 69161 | 70051 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| MIDHCGJL_23 | 1055 | 1879 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| MIDHCGJL_23 | 1 | 852 | ErmF | ARO:3000498 | ErmF | 98.12 | 106.39 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MIDHCGJL_23 | 1055 | 1879 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| MIDHCGJL_8 | 75489 | 77414 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| MIDHCGJL_23 | 52 | 852 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MIDHCGJL_23 | 1058 | 1879 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| MIDHCGJL_23 | 69161 | 70048 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| MIDHCGJL_8 | 75489 | 77411 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| MIDHCGJL_23 | 52 | 849 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MIDHCGJL_1 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_2 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_3 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_4 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_5 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_6 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_7 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_8 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_9 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_10 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_11 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_12 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_13 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_14 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_15 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_16 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_17 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_18 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_19 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_20 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_21 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_22 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_23 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_24 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_25 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_26 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_27 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_28 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_29 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_30 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_31 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_32 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_33 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_34 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_35 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_36 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_37 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_38 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_39 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_41 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_42 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_43 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_44 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_45 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_46 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_47 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_48 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_49 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_50 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_51 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_52 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_53 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_54 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_55 | 1.0 | 0.0 | 1.0 |
| MIDHCGJL_56 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_61 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_62 | 0.0 | 1.0 | 0.0 |
| MIDHCGJL_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MIDHCGJL_9 | 89862 | 96661 | True | Unknown | VOG4609, |
| MIDHCGJL_23 | 245757 | 257036 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)