Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMGIFPKN_17 | 68014 | 67817 | CspA | 2.19e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PMGIFPKN_17 | 68014 | 67820 | CspR | 1.87e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMGIFPKN_1 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_2 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_8 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_9 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_10 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_11 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_12 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_13 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_14 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_15 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_16 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_17 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_18 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_19 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_20 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_21 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_22 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_23 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_24 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_25 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_26 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_27 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_28 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_29 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_30 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_31 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_32 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_33 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_34 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_35 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_36 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_37 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_38 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_39 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_40 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_41 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_42 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_43 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_44 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_45 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_46 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_47 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_48 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_49 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_50 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_51 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_52 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_53 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_54 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_55 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_56 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_57 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_58 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_59 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_60 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_61 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_62 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_63 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_64 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_65 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_66 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_67 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_68 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_69 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_71 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_72 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_73 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_74 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_75 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_76 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_77 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_78 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_79 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_80 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_81 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_82 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_83 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_84 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_85 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_86 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_87 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_88 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_89 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_90 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_91 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_92 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_93 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_94 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_95 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_96 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_97 | 1.0 | 0.0 | 1.0 |
| PMGIFPKN_98 | 0.0 | 1.0 | 0.0 |
| PMGIFPKN_99 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMGIFPKN_1 | 92401 | 99474 | False | Siphoviridae | VOG0275, VOG7424, VOG3685, VOG3557, VOG0862, VOG6495, VOG10093, VOG6450, VOG2228, VOG4552, VOG4052 |
| PMGIFPKN_23 | 2378 | 9676 | False | Siphoviridae | VOG0275, VOG4677, VOG1159, VOG4585, VOG0275 |
| PMGIFPKN_33 | 5919 | 13294 | False | Myoviridae | VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
| PMGIFPKN_50 | 41751 | 72652 | False | Siphoviridae | VOG5088, VOG4615, VOG0703, VOG9091, VOG8917, VOG10223, VOG4856, VOG9997, VOG7133, VOG10972, VOG3462, VOG0801, VOG8263, VOG6698, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)