Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGAFAGLP_34 | 162029 | 163954 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EGAFAGLP_31 | 18185 | 20110 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| EGAFAGLP_31 | 1949 | 2914 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| EGAFAGLP_30 | 957 | 1784 | OXA-347 | ARO:3001777 | OXA-347 | 99.27 | 100.36 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGAFAGLP_31 | 1949 | 2914 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| EGAFAGLP_34 | 162029 | 163954 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| EGAFAGLP_30 | 957 | 1784 | blaOXA-347 | Unknown Beta-lactam | 99.64 | 100.00 | ACWG01000053 |
| EGAFAGLP_30 | 1 | 754 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.47 | 94.13 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGAFAGLP_31 | 1949 | 2911 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| EGAFAGLP_34 | 162032 | 163954 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| EGAFAGLP_30 | 960 | 1784 | blaOXA | class D beta-lactamase | BLASTX | 99.27 | 100.00 | WP_004295324.1 |
| EGAFAGLP_30 | 2 | 751 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.80 | 93.98 | WP_002682030.1 |
| EGAFAGLP_31 | 18188 | 20110 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EGAFAGLP_76 | 65555 | 67135 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.45 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGAFAGLP_1 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_2 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_3 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_4 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_5 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_6 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_7 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_8 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_9 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_10 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_11 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_12 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_13 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_14 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_15 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_16 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_17 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_18 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_19 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_20 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_21 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_22 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_23 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_24 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_25 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_26 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_27 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_28 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_29 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_30 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_31 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_32 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_33 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_34 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_35 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_36 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_37 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_38 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_39 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_40 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_41 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_42 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_43 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_44 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_45 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_46 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_47 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_48 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_49 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_50 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_51 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_52 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_53 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_54 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_55 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_56 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_58 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_59 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_60 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_61 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_62 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_63 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_64 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_65 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_66 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_67 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_68 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_69 | 1.0 | 0.0 | 1.0 |
| EGAFAGLP_75 | 0.0 | 1.0 | 0.0 |
| EGAFAGLP_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGAFAGLP_23 | 173696 | 179883 | False | Unknown | VOG10904, |
Phigaro v2.4.0 (Database: Jan. 2024 release)