Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIPLGGEC_49 | 2649 | 3539 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JIPLGGEC_108 | 166 | 966 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| JIPLGGEC_6 | 3 | 1352 | tet(Q) | ARO:3000191 | tet(Q) | 95.32 | 68.34 | Z21523.1 |
| JIPLGGEC_7 | 3 | 1352 | tet(Q) | ARO:3000191 | tet(Q) | 95.55 | 68.34 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIPLGGEC_6 | 1 | 1352 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.56 | 70.20 | L33696 |
| JIPLGGEC_108 | 166 | 966 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIPLGGEC_49 | 2652 | 3539 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JIPLGGEC_6 | 3 | 1349 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.89 | 70.05 | WP_063856407.1 |
| JIPLGGEC_108 | 166 | 963 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JIPLGGEC_7 | 3 | 1349 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.22 | 70.05 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIPLGGEC_1 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_2 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_3 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_4 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_5 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_6 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_7 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_8 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_9 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_10 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_11 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_12 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_13 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_14 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_15 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_16 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_17 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_18 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_19 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_24 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_29 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_30 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_31 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_32 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_33 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_34 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_35 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_36 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_37 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_38 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_39 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_40 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_41 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_42 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_43 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_44 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_45 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_46 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_47 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_48 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_49 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_50 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_51 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_52 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_53 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_54 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_55 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_56 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_57 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_58 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_59 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_60 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_61 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_62 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_63 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_64 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_65 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_66 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_67 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_68 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_69 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_70 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_71 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_72 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_73 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_74 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_75 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_76 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_77 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_78 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_79 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_80 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_81 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_82 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_83 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_84 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_85 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_86 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_87 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_88 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_89 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_90 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_91 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_92 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_93 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_94 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_95 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_96 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_98 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_99 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_100 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_101 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_102 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_103 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_104 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_105 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_106 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_107 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_108 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_109 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_110 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_111 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_112 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_113 | 0.0 | 1.0 | 0.0 |
| JIPLGGEC_114 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_115 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_116 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_117 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_118 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_119 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_120 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_121 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_122 | 1.0 | 0.0 | 1.0 |
| JIPLGGEC_123 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIPLGGEC_1 | 112294 | 123086 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)