Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEMBPCML_1 | 246278 | 247483 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| BEMBPCML_25 | 35178 | 36143 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| BEMBPCML_15 | 16014 | 17939 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| BEMBPCML_75 | 285 | 1085 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BEMBPCML_25 | 35178 | 36143 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| BEMBPCML_15 | 16014 | 17939 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| BEMBPCML_75 | 285 | 1085 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEMBPCML_25 | 35181 | 36143 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| BEMBPCML_1 | 247508 | 248017 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| BEMBPCML_15 | 16014 | 17936 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| BEMBPCML_1 | 246278 | 247480 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| BEMBPCML_75 | 288 | 1085 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| BEMBPCML_9 | 2506 | 3303 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BEMBPCML_68 | 844 | 1424 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEMBPCML_1 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_2 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_3 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_4 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_5 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_6 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_7 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_8 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_9 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_10 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_11 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_12 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_13 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_14 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_15 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_16 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_17 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_18 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_19 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_20 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_21 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_22 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_23 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_24 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_25 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_26 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_27 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_28 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_29 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_30 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_31 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_32 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_33 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_34 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_35 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_36 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_37 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_38 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_39 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_40 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_41 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_42 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_43 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_44 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_45 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_46 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_47 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_48 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_49 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_50 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_51 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_52 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_53 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_54 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_55 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_56 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_57 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_58 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_59 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_61 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_62 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_63 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_64 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_65 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_66 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_67 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_68 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_69 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_70 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_71 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_72 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_73 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_74 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_75 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_76 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_77 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_78 | 0.0 | 1.0 | 0.0 |
| BEMBPCML_79 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_80 | 1.0 | 0.0 | 1.0 |
| BEMBPCML_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEMBPCML_2 | 78755 | 84016 | False | Unknown | VOG4548, |
| BEMBPCML_12 | 391198 | 401695 | True | Unknown | VOG0348, |
| BEMBPCML_22 | 13200 | 20744 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)