Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIAAGMPJ_50 | 52408 | 53310 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| JIAAGMPJ_50 | 30155 | 31360 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JIAAGMPJ_56 | 15603 | 17528 | tet(Q) | ARO:3000191 | tet(Q) | 96.88 | 97.56 | Z21523.1 |
| JIAAGMPJ_47 | 1492 | 2454 | CfxA3 | ARO:3003003 | CfxA3 | 99.38 | 99.69 | AF472622.2 |
| JIAAGMPJ_128 | 1191 | 1991 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIAAGMPJ_50 | 52408 | 53310 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | FR688022 |
| JIAAGMPJ_56 | 15603 | 17528 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | X58717 |
| JIAAGMPJ_47 | 1492 | 2454 | cfxA3 | Ampicillin | 99.59 | 99.69 | AF472622 |
| JIAAGMPJ_47 | 1492 | 2454 | cfxA4 | Unknown Beta-lactam | 99.59 | 99.69 | AY769933 |
| JIAAGMPJ_47 | 1492 | 2454 | cfxA5 | Unknown Beta-lactam | 99.59 | 99.69 | AY769934 |
| JIAAGMPJ_128 | 1191 | 1991 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIAAGMPJ_50 | 52408 | 53307 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| JIAAGMPJ_50 | 29621 | 30130 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JIAAGMPJ_56 | 15606 | 17528 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_004293868.1 |
| JIAAGMPJ_50 | 30158 | 31360 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JIAAGMPJ_47 | 1495 | 2454 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| JIAAGMPJ_128 | 1191 | 1988 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIAAGMPJ_132 | 1827 | 2407 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIAAGMPJ_1 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_2 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_3 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_4 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_5 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_6 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_7 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_8 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_9 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_10 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_11 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_12 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_13 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_14 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_15 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_16 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_17 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_18 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_19 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_20 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_21 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_23 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_24 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_25 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_26 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_27 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_28 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_29 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_30 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_31 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_32 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_33 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_34 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_35 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_36 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_46 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_47 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_48 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_49 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_50 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_51 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_52 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_53 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_54 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_55 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_56 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_57 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_58 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_59 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_60 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_61 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_62 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_63 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_64 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_65 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_66 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_67 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_68 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_69 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_70 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_71 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_72 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_73 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_74 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_75 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_76 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_77 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_78 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_79 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_80 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_81 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_82 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_83 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_84 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_85 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_86 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_87 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_88 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_89 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_90 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_91 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_92 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_93 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_94 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_95 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_96 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_97 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_98 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_99 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_100 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_101 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_102 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_103 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_104 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_105 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_106 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_107 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_108 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_109 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_110 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_111 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_112 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_113 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_114 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_115 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_116 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_117 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_118 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_119 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_120 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_121 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_122 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_123 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_124 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_125 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_126 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_127 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_128 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_129 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_130 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_131 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_132 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_133 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_134 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_135 | 0.0 | 1.0 | 0.0 |
| JIAAGMPJ_136 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_137 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_138 | 1.0 | 0.0 | 1.0 |
| JIAAGMPJ_139 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIAAGMPJ_48 | 70853 | 73779 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)