Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NAKLGAJH_37 | 257 | 994 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NAKLGAJH_37 | 257 | 994 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NAKLGAJH_37 | 260 | 994 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAKLGAJH_1 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_2 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_3 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_4 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_5 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_6 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_7 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_8 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_9 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_10 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_11 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_12 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_13 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_14 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_15 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_16 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_17 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_18 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_19 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_20 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_21 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_22 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_23 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_24 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_25 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_26 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_27 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_28 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_29 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_30 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_31 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_32 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_34 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_35 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_37 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_38 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_40 | 1.0 | 0.0 | 1.0 |
| NAKLGAJH_41 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_45 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_46 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_47 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_48 | 0.0 | 1.0 | 0.0 |
| NAKLGAJH_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAKLGAJH_34 | 32516 | 61787 | True | Siphoviridae | VOG7937, |
Phigaro v2.4.0 (Database: Jan. 2024 release)