Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGHPGCKA_54 | 102923 | 106483 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| EGHPGCKA_30 | 394 | 1248 | ErmX | ARO:3000596 | ErmX | 87.32 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGHPGCKA_30 | 394 | 1156 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGHPGCKA_30 | 394 | 1245 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.48 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGHPGCKA_1 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_2 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_3 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_4 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_5 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_6 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_7 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_8 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_9 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_10 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_11 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_12 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_13 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_14 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_15 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_16 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_17 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_18 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_19 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_20 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_21 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_22 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_23 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_24 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_25 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_27 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_28 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_29 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_30 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_31 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_32 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_33 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_34 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_35 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_36 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_37 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_38 | 1.0 | 0.0 | 1.0 |
| EGHPGCKA_45 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_54 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_55 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_56 | 0.0 | 1.0 | 0.0 |
| EGHPGCKA_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGHPGCKA_10 | 8004 | 24712 | False | Siphoviridae | VOG1574, VOG5101, VOG0720, VOG2806, VOG2651, VOG3434, VOG1887, VOG1581, VOG8409, VOG8533, VOG4557 |
| EGHPGCKA_11 | 1896 | 13507 | False | Siphoviridae | VOG8722, VOG8271, VOG2038, VOG0296, VOG4618, VOG4571, VOG1146, VOG4544, VOG4556, VOG4568, VOG4553, VOG1210, VOG1158, VOG1159 |
Phigaro v2.4.0 (Database: Jan. 2024 release)