Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCBCIBCO_5 | 108190 | 109155 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| CCBCIBCO_40 | 11220 | 13055 | tet(Q) | ARO:3000191 | tet(Q) | 96.24 | 93.00 | Z21523.1 |
| CCBCIBCO_37 | 1202 | 3127 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CCBCIBCO_37 | 115 | 915 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCBCIBCO_5 | 108190 | 109155 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CCBCIBCO_40 | 11220 | 13057 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 95.43 | L33696 |
| CCBCIBCO_37 | 115 | 915 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCBCIBCO_5 | 108190 | 109152 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CCBCIBCO_40 | 11223 | 13055 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.51 | 95.32 | WP_063856407.1 |
| CCBCIBCO_37 | 115 | 912 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CCBCIBCO_37 | 1202 | 3124 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCBCIBCO_45 | 99008 | 97428 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCBCIBCO_1 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_2 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_3 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_4 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_5 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_6 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_7 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_8 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_9 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_10 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_11 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_12 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_13 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_14 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_15 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_16 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_17 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_18 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_19 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_20 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_21 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_22 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_23 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_24 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_25 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_26 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_27 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_28 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_29 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_30 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_31 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_32 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_33 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_34 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_35 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_36 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_37 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_38 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_39 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_40 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_41 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_42 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_43 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_44 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_45 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_46 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_47 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_48 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_49 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_50 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_51 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_52 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_53 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_54 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_55 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_56 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_57 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_58 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_59 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_60 | 1.0 | 0.0 | 1.0 |
| CCBCIBCO_65 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_66 | 0.0 | 1.0 | 0.0 |
| CCBCIBCO_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCBCIBCO_2 | 122289 | 125197 | False | Siphoviridae | VOG7108, |
| CCBCIBCO_15 | 54897 | 67976 | False | Unknown | VOG7641, |
| CCBCIBCO_35 | 3560 | 8541 | False | Unknown | VOG4609, |
Phigaro v2.4.0 (Database: Jan. 2024 release)