Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHECJKJN_139 | 84188 | 86113 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KHECJKJN_111 | 1201 | 3126 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| KHECJKJN_89 | 193 | 1158 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KHECJKJN_111 | 114 | 914 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KHECJKJN_89 | 193 | 1158 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| KHECJKJN_139 | 84188 | 86113 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KHECJKJN_111 | 114 | 914 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
| KHECJKJN_86 | 23693 | 24643 | cfxA4 | Unknown Beta-lactam | 86.12 | 98.34 | AY769933 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KHECJKJN_89 | 193 | 1155 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KHECJKJN_139 | 84188 | 86110 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KHECJKJN_111 | 114 | 911 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| KHECJKJN_111 | 1201 | 3123 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| KHECJKJN_86 | 23691 | 24644 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 83.65 | 99.07 | WP_057280848.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KHECJKJN_1 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_2 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_3 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_4 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_5 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_6 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_7 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_8 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_9 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_10 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_11 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_12 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_13 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_14 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_15 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_16 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_17 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_19 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_20 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_21 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_22 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_23 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_24 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_25 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_28 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_29 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_30 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_32 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_34 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_35 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_36 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_38 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_39 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_40 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_46 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_57 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_68 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_70 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_71 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_72 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_73 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_74 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_75 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_76 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_77 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_78 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_79 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_80 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_81 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_82 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_83 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_84 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_85 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_86 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_87 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_88 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_89 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_90 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_91 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_92 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_93 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_94 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_95 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_96 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_97 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_98 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_99 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_100 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_101 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_102 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_103 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_104 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_105 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_106 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_107 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_108 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_109 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_110 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_111 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_112 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_113 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_114 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_115 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_116 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_117 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_118 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_119 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_120 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_121 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_122 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_123 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_124 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_125 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_126 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_127 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_128 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_129 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_130 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_131 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_132 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_133 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_134 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_135 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_136 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_137 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_138 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_139 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_140 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_141 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_142 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_143 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_144 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_145 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_146 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_147 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_148 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_149 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_150 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_151 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_152 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_153 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_154 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_155 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_156 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_157 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_158 | 0.0 | 1.0 | 0.0 |
| KHECJKJN_159 | 1.0 | 0.0 | 1.0 |
| KHECJKJN_160 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)