Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFLGJHJ_11 | 29664 | 30566 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
| FFFLGJHJ_8 | 2438 | 3643 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| FFFLGJHJ_15 | 13097 | 14449 | tet(Q) | ARO:3000191 | tet(Q) | 95.68 | 68.49 | Z21523.1 |
| FFFLGJHJ_16 | 12261 | 13592 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 67.43 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFFLGJHJ_11 | 29664 | 30566 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
| FFFLGJHJ_11 | 29664 | 30566 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
| FFFLGJHJ_16 | 12225 | 13592 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.63 | 69.62 | U73497 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFLGJHJ_8 | 1904 | 2413 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| FFFLGJHJ_8 | 2441 | 3643 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| FFFLGJHJ_11 | 29667 | 30566 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
| FFFLGJHJ_16 | 12264 | 13592 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 69.11 | WP_002560998.1 |
| FFFLGJHJ_15 | 13130 | 14449 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.18 | 68.64 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFFLGJHJ_1 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_2 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_3 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_4 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_5 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_6 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_7 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_8 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_9 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_10 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_11 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_12 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_13 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_14 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_15 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_16 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_17 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_18 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_19 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_20 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_21 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_22 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_23 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_24 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_25 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_26 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_27 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_28 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_30 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_31 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_32 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_33 | 1.0 | 0.0 | 1.0 |
| FFFLGJHJ_34 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_41 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_42 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_43 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_44 | 0.0 | 1.0 | 0.0 |
| FFFLGJHJ_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FFFLGJHJ_23 | 486952 | 496628 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)