Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJMPPLEE_44 | 241748 | 243673 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HJMPPLEE_46 | 59637 | 60602 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| HJMPPLEE_56 | 1594 | 2457 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HJMPPLEE_108 | 3 | 968 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 108.45 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJMPPLEE_46 | 59637 | 60602 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HJMPPLEE_44 | 241748 | 243673 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJMPPLEE_56 | 1597 | 2457 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HJMPPLEE_46 | 59637 | 60599 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HJMPPLEE_44 | 241751 | 243673 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HJMPPLEE_108 | 78 | 965 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJMPPLEE_16 | 2 | 967 | tufA | 0.0 | elongation factor Tu | 80.75 | 81.47 | AHM69299 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJMPPLEE_1 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_2 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_3 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_4 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_5 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_6 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_7 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_8 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_9 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_10 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_11 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_12 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_13 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_24 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_35 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_38 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_39 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_40 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_41 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_42 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_43 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_44 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_45 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_46 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_47 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_48 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_49 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_50 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_51 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_52 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_53 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_54 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_55 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_56 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_57 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_58 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_59 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_60 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_61 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_62 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_63 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_64 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_65 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_66 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_67 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_68 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_69 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_70 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_71 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_72 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_73 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_74 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_75 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_76 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_77 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_78 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_79 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_80 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_81 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_82 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_83 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_84 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_85 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_86 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_87 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_88 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_89 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_90 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_91 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_92 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_93 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_94 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_95 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_96 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_97 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_98 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_99 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_100 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_101 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_103 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_104 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_105 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_106 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_107 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_108 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_109 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_110 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_111 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_112 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_113 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_114 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_115 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_116 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_117 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_118 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_119 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_120 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_121 | 0.0 | 1.0 | 0.0 |
| HJMPPLEE_122 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_123 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_124 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_125 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_126 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_127 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_128 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_129 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_130 | 1.0 | 0.0 | 1.0 |
| HJMPPLEE_131 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJMPPLEE_67 | 12526 | 32651 | False | Podoviridae | VOG6673, |
Phigaro v2.4.0 (Database: Jan. 2024 release)