Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGIIKBHN_2 | 182465 | 183328 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GGIIKBHN_30 | 38998 | 40971 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| GGIIKBHN_101 | 53 | 868 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGIIKBHN_101 | 53 | 868 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| GGIIKBHN_30 | 38998 | 40923 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| GGIIKBHN_2 | 184571 | 185157 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 73.28 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGIIKBHN_2 | 182465 | 183325 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GGIIKBHN_101 | 56 | 868 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| GGIIKBHN_30 | 39001 | 40923 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| GGIIKBHN_2 | 184574 | 185155 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 72.93 | WP_002682030.1 |
| GGIIKBHN_38 | 12364 | 13161 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGIIKBHN_18 | 38854 | 37274 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GGIIKBHN_79 | 860 | 1440 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGIIKBHN_1 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_2 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_11 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_12 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_13 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_14 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_15 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_16 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_17 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_18 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_19 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_20 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_21 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_22 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_23 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_24 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_25 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_26 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_27 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_28 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_29 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_30 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_31 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_32 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_33 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_34 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_35 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_36 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_37 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_38 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_39 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_40 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_41 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_42 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_43 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_44 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_45 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_46 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_47 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_48 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_49 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_50 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_51 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_52 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_53 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_54 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_55 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_56 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_57 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_58 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_59 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_60 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_61 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_62 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_63 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_64 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_65 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_66 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_67 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_68 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_69 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_70 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_71 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_72 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_73 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_74 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_75 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_76 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_77 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_78 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_79 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_80 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_81 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_82 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_83 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_84 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_85 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_86 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_87 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_88 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_89 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_90 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_91 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_92 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_93 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_94 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_95 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_96 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_97 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_98 | 1.0 | 0.0 | 1.0 |
| GGIIKBHN_99 | 0.0 | 1.0 | 0.0 |
| GGIIKBHN_100 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)