Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIGCIIEL_13 | 241748 | 243673 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HIGCIIEL_26 | 60177 | 61142 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 108.45 | GQ343019.1 |
| HIGCIIEL_46 | 33868 | 34833 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| HIGCIIEL_21 | 1594 | 2457 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIGCIIEL_46 | 33868 | 34833 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HIGCIIEL_13 | 241748 | 243673 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIGCIIEL_21 | 1597 | 2457 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HIGCIIEL_46 | 33871 | 34833 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HIGCIIEL_13 | 241751 | 243673 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HIGCIIEL_26 | 60180 | 61067 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIGCIIEL_1 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_2 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_4 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_5 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_6 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_7 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_8 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_9 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_10 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_11 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_12 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_13 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_14 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_15 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_16 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_17 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_18 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_19 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_20 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_21 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_22 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_23 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_24 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_25 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_26 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_27 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_28 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_29 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_30 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_31 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_32 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_33 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_34 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_35 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_36 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_37 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_38 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_39 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_40 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_41 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_42 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_43 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_44 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_45 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_46 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_47 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_48 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_49 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_50 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_51 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_52 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_53 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_54 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_55 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_56 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_57 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_58 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_59 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_60 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_61 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_62 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_63 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_64 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_65 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_66 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_67 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_68 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_69 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_70 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_71 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_72 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_73 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_74 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_75 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_76 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_77 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_78 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_79 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_80 | 0.0 | 1.0 | 0.0 |
| HIGCIIEL_81 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_82 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_83 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_84 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_85 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_86 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_87 | 1.0 | 0.0 | 1.0 |
| HIGCIIEL_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)