Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOCKPLHG_11 | 212454 | 215780 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.01 | 100.09 | CP001840.1 |
| BOCKPLHG_2 | 41080 | 44712 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| BOCKPLHG_2 | 28796 | 30715 | tet(W) | ARO:3000194 | tet(W) | 97.50 | 100.00 | AJ222769.3 |
| BOCKPLHG_6 | 223 | 1077 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BOCKPLHG_6 | 223 | 985 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
| BOCKPLHG_2 | 28796 | 30715 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOCKPLHG_2 | 28796 | 30712 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_033493020.1 |
| BOCKPLHG_6 | 223 | 1074 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOCKPLHG_1 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_2 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_3 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_4 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_5 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_6 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_7 | 1.0 | 0.0 | 1.0 |
| BOCKPLHG_8 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_9 | 1.0 | 0.0 | 1.0 |
| BOCKPLHG_11 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_12 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_13 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_14 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_15 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_16 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_17 | 0.0 | 1.0 | 0.0 |
| BOCKPLHG_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOCKPLHG_12 | 68743 | 76383 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| BOCKPLHG_17 | 121886 | 144886 | False | Siphoviridae | VOG2842, VOG4571, VOG0275, VOG3594, VOG4602, VOG4675, VOG5858, VOG2215, VOG10900, VOG4552, VOG0226, VOG1931, VOG9343, VOG5782, VOG0943, VOG2538, VOG2038, VOG2545, VOG0376, VOG4841, VOG9852 |
| BOCKPLHG_18 | 105665 | 126843 | False | Myoviridae | VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)