Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMLMHIPO_39 | 182712 | 184637 | tet(Q) | ARO:3000191 | tet(Q) | 97.82 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMLMHIPO_39 | 182712 | 184637 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.87 | 100.00 | L33696 |
| OMLMHIPO_49 | 42774 | 43570 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMLMHIPO_39 | 182715 | 184637 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_002560998.1 |
| OMLMHIPO_49 | 42773 | 43570 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OMLMHIPO_88 | 735 | 1414 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMLMHIPO_1 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_2 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_8 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_9 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_10 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_11 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_12 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_13 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_14 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_15 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_16 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_17 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_18 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_19 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_20 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_21 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_22 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_23 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_24 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_25 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_26 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_27 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_28 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_29 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_30 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_31 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_32 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_33 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_34 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_35 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_36 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_37 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_38 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_39 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_40 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_41 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_42 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_43 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_44 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_45 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_46 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_47 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_48 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_49 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_50 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_51 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_52 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_53 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_54 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_55 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_56 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_57 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_58 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_59 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_60 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_61 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_62 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_63 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_64 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_65 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_66 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_67 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_68 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_69 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_70 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_71 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_72 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_73 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_74 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_75 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_76 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_77 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_78 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_79 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_80 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_81 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_82 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_83 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_84 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_85 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_86 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_87 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_88 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_89 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_90 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_91 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_92 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_93 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_94 | 0.0 | 1.0 | 0.0 |
| OMLMHIPO_95 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_96 | 1.0 | 0.0 | 1.0 |
| OMLMHIPO_97 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMLMHIPO_2 | 62191 | 70831 | False | Unknown | VOG0226, |
| OMLMHIPO_22 | 59984 | 67977 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)