Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFCDCMKM_45 | 182756 | 184681 | tet(Q) | ARO:3000191 | tet(Q) | 97.82 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFCDCMKM_45 | 182756 | 184681 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.87 | 100.00 | L33696 |
| FFCDCMKM_41 | 42774 | 43570 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFCDCMKM_45 | 182759 | 184681 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_002560998.1 |
| FFCDCMKM_41 | 42773 | 43570 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FFCDCMKM_74 | 1336 | 2015 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFCDCMKM_1 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_2 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_3 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_4 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_5 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_6 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_7 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_8 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_9 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_10 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_11 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_12 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_13 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_14 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_15 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_16 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_17 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_18 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_19 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_20 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_21 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_22 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_23 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_24 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_25 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_26 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_27 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_28 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_29 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_30 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_31 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_32 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_33 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_34 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_35 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_36 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_37 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_38 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_39 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_40 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_41 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_42 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_43 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_44 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_45 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_46 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_47 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_48 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_49 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_50 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_51 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_52 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_53 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_54 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_55 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_56 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_57 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_58 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_59 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_60 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_61 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_62 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_63 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_64 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_65 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_66 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_67 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_68 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_69 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_70 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_71 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_72 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_73 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_74 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_75 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_76 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_77 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_78 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_79 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_80 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_81 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_82 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_83 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_84 | 1.0 | 0.0 | 1.0 |
| FFCDCMKM_85 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_86 | 0.0 | 1.0 | 0.0 |
| FFCDCMKM_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FFCDCMKM_2 | 96473 | 105113 | False | Unknown | VOG9345, |
| FFCDCMKM_16 | 59629 | 67622 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)