Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGPNHAFI_56 | 45965 | 46930 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IGPNHAFI_56 | 45965 | 46930 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGPNHAFI_56 | 45968 | 46930 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGPNHAFI_1 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_2 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_3 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_4 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_5 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_6 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_7 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_8 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_9 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_10 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_11 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_12 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_13 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_14 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_15 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_16 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_17 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_18 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_19 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_20 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_21 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_22 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_23 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_24 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_25 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_26 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_27 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_28 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_29 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_30 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_31 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_32 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_33 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_34 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_35 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_36 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_37 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_38 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_39 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_40 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_41 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_42 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_43 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_45 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_46 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_47 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_48 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_49 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_50 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_51 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_52 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_53 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_54 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_55 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_56 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_57 | 1.0 | 0.0 | 1.0 |
| IGPNHAFI_64 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_65 | 0.0 | 1.0 | 0.0 |
| IGPNHAFI_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)