Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHGJNCJG_33 | 17438 | 18298 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.52 | M17124.1 |
| PHGJNCJG_33 | 15226 | 17151 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| PHGJNCJG_75 | 2 | 1699 | tet(Q) | ARO:3000191 | tet(Q) | 96.82 | 86.15 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PHGJNCJG_33 | 17438 | 18238 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHGJNCJG_33 | 17441 | 18238 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PHGJNCJG_75 | 2 | 1699 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 96.82 | 85.49 | WP_002560998.1 |
| PHGJNCJG_33 | 15229 | 17151 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHGJNCJG_89 | 25892 | 24312 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHGJNCJG_1 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_2 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_3 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_4 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_5 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_6 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_7 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_8 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_9 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_10 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_11 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_12 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_13 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_14 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_15 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_16 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_17 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_18 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_19 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_20 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_21 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_22 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_23 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_24 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_25 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_26 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_27 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_28 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_29 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_30 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_31 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_32 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_33 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_34 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_35 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_36 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_37 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_38 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_39 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_40 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_41 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_42 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_43 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_44 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_45 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_46 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_47 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_48 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_49 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_50 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_51 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_52 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_53 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_54 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_55 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_56 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_57 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_58 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_59 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_60 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_61 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_62 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_63 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_64 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_65 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_66 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_67 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_68 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_69 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_70 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_71 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_72 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_73 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_74 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_75 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_76 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_77 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_78 | 0.0 | 1.0 | 0.0 |
| PHGJNCJG_79 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_80 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_81 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_82 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_83 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_84 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_85 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_86 | 1.0 | 0.0 | 1.0 |
| PHGJNCJG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHGJNCJG_2 | 88501 | 99375 | False | Siphoviridae | VOG3992, |
| PHGJNCJG_67 | 241307 | 250921 | False | Unknown | VOG0025, |
Phigaro v2.4.0 (Database: Jan. 2024 release)