Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHNLHAIG_24 | 41288 | 42190 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHNLHAIG_24 | 41288 | 42190 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHNLHAIG_24 | 41288 | 42187 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHNLHAIG_73 | 66 | 646 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHNLHAIG_1 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_2 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_3 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_4 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_5 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_6 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_7 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_8 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_9 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_10 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_11 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_12 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_13 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_14 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_15 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_16 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_17 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_18 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_19 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_20 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_21 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_22 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_23 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_24 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_25 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_26 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_27 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_28 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_29 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_30 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_31 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_32 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_33 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_34 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_35 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_36 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_37 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_38 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_39 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_40 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_41 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_42 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_43 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_44 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_45 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_46 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_47 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_48 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_49 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_50 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_51 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_52 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_53 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_54 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_55 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_56 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_57 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_58 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_59 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_60 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_61 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_62 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_64 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_65 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_66 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_67 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_68 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_69 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_70 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_71 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_72 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_73 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_74 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_75 | 1.0 | 0.0 | 1.0 |
| GHNLHAIG_78 | 0.0 | 1.0 | 0.0 |
| GHNLHAIG_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHNLHAIG_7 | 99982 | 111927 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)