Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FDDPCKPB_12 | 15286 | 16023 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FDDPCKPB_12 | 15286 | 16023 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AF299292 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FDDPCKPB_12 | 15286 | 16020 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FDDPCKPB_1 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_2 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_3 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_4 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_5 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_6 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_7 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_8 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_9 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_10 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_11 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_12 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_13 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_16 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_17 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_18 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_21 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_23 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_24 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_25 | 1.0 | 0.0 | 1.0 |
| FDDPCKPB_27 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_31 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_32 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_33 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_34 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_35 | 0.0 | 1.0 | 0.0 |
| FDDPCKPB_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FDDPCKPB_1 | 186128 | 234558 | False | Siphoviridae | VOG6495, |
| FDDPCKPB_1 | 239089 | 256695 | False | Siphoviridae | VOG6628, |
| FDDPCKPB_34 | 26724 | 27794 | False | Unknown | VOG8888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)