Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFPFDFKC_37 | 4026 | 4763 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| KFPFDFKC_14 | 2350 | 3570 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| KFPFDFKC_14 | 380 | 2299 | tet(O) | ARO:3000190 | tet(O) | 98.75 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KFPFDFKC_37 | 4026 | 4763 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U86375 |
| KFPFDFKC_14 | 2350 | 3570 | tet(40) | Doxycycline, Tetracycline | 99.92 | 100.00 | FJ158002 |
| KFPFDFKC_14 | 380 | 2299 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.32 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFPFDFKC_37 | 4026 | 4760 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038790.1 |
| KFPFDFKC_14 | 2350 | 3567 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_024407615.1 |
| KFPFDFKC_14 | 380 | 2296 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.37 | 100.00 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KFPFDFKC_37 | 5759 | 7249 | rep1 | 1491 / 1491 | 100.00 | AE016833 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KFPFDFKC_1 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_2 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_3 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_4 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_5 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_6 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_7 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_8 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_9 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_10 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_11 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_12 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_13 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_14 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_15 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_16 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_17 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_18 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_19 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_20 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_21 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_22 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_23 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_24 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_25 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_26 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_27 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_28 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_29 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_30 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_31 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_32 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_33 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_34 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_35 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_36 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_37 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_38 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_39 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_40 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_41 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_42 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_43 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_44 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_45 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_46 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_47 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_48 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_49 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_50 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_51 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_52 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_53 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_54 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_55 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_56 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_57 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_58 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_59 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_60 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_61 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_62 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_63 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_64 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_66 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_67 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_68 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_69 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_70 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_71 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_72 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_73 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_74 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_75 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_76 | 1.0 | 0.0 | 1.0 |
| KFPFDFKC_78 | 0.0 | 1.0 | 0.0 |
| KFPFDFKC_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KFPFDFKC_12 | 249276 | 278617 | False | Myoviridae | VOG4705, |
| KFPFDFKC_14 | 10336 | 17420 | False | Unknown | VOG1275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)