Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCBDLJLB_16 | 7038 | 8471 | tet(Q) | ARO:3000191 | tet(Q) | 98.48 | 72.60 | Z21523.1 |
| KCBDLJLB_23 | 1 | 1851 | tet(Q) | ARO:3000191 | tet(Q) | 96.43 | 93.76 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KCBDLJLB_23 | 1 | 1851 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.78 | 96.11 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCBDLJLB_23 | 1 | 1848 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.35 | 96.10 | WP_063856407.1 |
| KCBDLJLB_16 | 7038 | 8417 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 98.48 | 71.76 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCBDLJLB_1 | 763221 | 764801 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCBDLJLB_1 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_2 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_3 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_4 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_5 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_6 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_7 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_8 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_9 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_10 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_11 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_12 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_13 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_14 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_15 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_16 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_17 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_19 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_20 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_21 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_22 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_23 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_24 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_25 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_26 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_27 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_28 | 1.0 | 0.0 | 1.0 |
| KCBDLJLB_32 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_33 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_34 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_35 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_36 | 0.0 | 1.0 | 0.0 |
| KCBDLJLB_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCBDLJLB_12 | 203355 | 215987 | False | Siphoviridae | VOG0189, |
| KCBDLJLB_23 | 243391 | 251516 | False | Siphoviridae | VOG7238, |
| KCBDLJLB_33 | 236634 | 240854 | False | Myoviridae | VOG0572, |
| KCBDLJLB_35 | 155052 | 163010 | False | Unknown | VOG0327, |
Phigaro v2.4.0 (Database: Jan. 2024 release)