Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDLNMGHL_13 | 118157 | 119011 | ErmX | ARO:3000596 | ErmX | 87.32 | 100.00 | M36726.1 |
| PDLNMGHL_1 | 76112 | 76606 | dfrF | ARO:3002867 | dfrF | 100.00 | 100.00 | AF028812.1 |
| PDLNMGHL_15 | 45513 | 49073 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 99.58 | 100.00 | NC_008618.1 |
| PDLNMGHL_3 | 6530 | 8449 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDLNMGHL_3 | 6530 | 8448 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 99.95 | AJ427422 |
| PDLNMGHL_13 | 118157 | 118919 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.99 | 100.00 | X51472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDLNMGHL_1 | 76112 | 76603 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
| PDLNMGHL_3 | 6530 | 8446 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| PDLNMGHL_13 | 118157 | 119008 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 96.48 | 100.00 | WP_011152925.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDLNMGHL_1 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_2 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_3 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_4 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_5 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_6 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_7 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_8 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_9 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_11 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_12 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_13 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_14 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_15 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_16 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_17 | 0.0 | 1.0 | 0.0 |
| PDLNMGHL_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDLNMGHL_2 | 44862 | 57436 | False | Siphoviridae | VOG9438, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793, VOG9569 |
Phigaro v2.4.0 (Database: Jan. 2024 release)