Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LANJJOEP_18 | 24660 | 25562 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
| LANJJOEP_35 | 5741 | 7684 | tet(Q) | ARO:3000191 | tet(Q) | 99.69 | 98.63 | Z21523.1 |
| LANJJOEP_7 | 103 | 903 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LANJJOEP_35 | 5789 | 7685 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 98.49 | Z21523 |
| LANJJOEP_18 | 24660 | 25562 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
| LANJJOEP_18 | 24660 | 25562 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
| LANJJOEP_7 | 103 | 903 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LANJJOEP_35 | 5789 | 7684 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.68 | 98.60 | WP_002560998.1 |
| LANJJOEP_18 | 24660 | 25559 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
| LANJJOEP_7 | 103 | 900 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LANJJOEP_1 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_2 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_3 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_4 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_5 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_6 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_7 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_8 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_9 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_10 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_11 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_12 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_13 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_14 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_15 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_16 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_17 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_18 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_19 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_20 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_21 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_22 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_23 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_24 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_25 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_26 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_27 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_28 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_29 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_30 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_31 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_32 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_33 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_34 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_35 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_36 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_37 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_38 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_39 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_40 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_41 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_42 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_43 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_44 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_45 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_46 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_47 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_48 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_49 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_50 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_51 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_52 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_53 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_54 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_55 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_56 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_57 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_58 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_59 | 1.0 | 0.0 | 1.0 |
| LANJJOEP_60 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_67 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_69 | 0.0 | 1.0 | 0.0 |
| LANJJOEP_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LANJJOEP_4 | 4210 | 9935 | False | Siphoviridae | VOG4553, |
Phigaro v2.4.0 (Database: Jan. 2024 release)