Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INIIKMEL_2 | 187127 | 188017 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| INIIKMEL_25 | 7589 | 9563 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| INIIKMEL_43 | 1549 | 2364 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| INIIKMEL_47 | 1041 | 1865 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| INIIKMEL_16 | 500 | 1363 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| INIIKMEL_47 | 2 | 838 | ErmF | ARO:3000498 | ErmF | 98.50 | 104.51 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INIIKMEL_47 | 1041 | 1865 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| INIIKMEL_43 | 1549 | 2364 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| INIIKMEL_25 | 7637 | 9562 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| INIIKMEL_47 | 38 | 838 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INIIKMEL_16 | 500 | 1360 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| INIIKMEL_47 | 1044 | 1865 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| INIIKMEL_43 | 1552 | 2364 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| INIIKMEL_25 | 7637 | 9559 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| INIIKMEL_47 | 38 | 835 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| INIIKMEL_2 | 187130 | 188017 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INIIKMEL_1 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_2 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_3 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_4 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_5 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_6 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_7 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_8 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_9 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_10 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_11 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_12 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_13 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_14 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_15 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_16 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_17 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_18 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_19 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_20 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_21 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_22 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_23 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_24 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_25 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_26 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_27 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_28 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_29 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_30 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_31 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_32 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_33 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_34 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_35 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_36 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_37 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_38 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_39 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_40 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_41 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_42 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_43 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_44 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_45 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_46 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_47 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_48 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_49 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_50 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_51 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_52 | 1.0 | 0.0 | 1.0 |
| INIIKMEL_56 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_57 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_58 | 0.0 | 1.0 | 0.0 |
| INIIKMEL_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INIIKMEL_1 | 353114 | 363301 | False | Unknown | VOG3992, |
| INIIKMEL_4 | 97750 | 105572 | False | Siphoviridae | VOG2124, |
| INIIKMEL_12 | 87458 | 94678 | False | Myoviridae | VOG0982, |
| INIIKMEL_58 | 21462 | 42750 | False | Siphoviridae | VOG7268, |
Phigaro v2.4.0 (Database: Jan. 2024 release)