safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
3	0	1	3.16

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
CJPDOKKA_7	88205	90130	tet(Q)	ARO:3000191	tet(Q)	89.08	97.56	Z21523.1
CJPDOKKA_7	87118	87918	ErmF	ARO:3000498	ErmF	98.50	100.00	M17124.1
CJPDOKKA_59	14781	16727	tet(Q)	ARO:3000191	tet(Q)	97.02	98.63	Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CJPDOKKA_7	87118	87918	erm(F)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.50	100.00	M17808
CJPDOKKA_59	14815	16727	tet(Q)	Doxycycline, Tetracycline, Minocycline	98.17	99.33	L33696

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CJPDOKKA_7	87118	87915	erm(F)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)	BLASTX	98.87	100.00	WP_002682030.1
CJPDOKKA_59	14814	16727	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	BLASTX	97.81	99.53	WP_004293868.1
CJPDOKKA_7	88205	90127	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	BLASTX	89.55	100.00	WP_063856407.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
CJPDOKKA_1	726533	728113	GroEL	0.0	folding of newly synthesized proteins, preventing misfolding and aggregation	86.91	96.70	BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
CJPDOKKA_1	0.0	1.0	0.0
CJPDOKKA_2	0.0	1.0	0.0
CJPDOKKA_3	0.0	1.0	0.0
CJPDOKKA_4	0.0	1.0	0.0
CJPDOKKA_5	0.0	1.0	0.0
CJPDOKKA_6	0.0	1.0	0.0
CJPDOKKA_7	0.0	1.0	0.0
CJPDOKKA_8	0.0	1.0	0.0
CJPDOKKA_9	0.0	1.0	0.0
CJPDOKKA_10	0.0	1.0	0.0
CJPDOKKA_11	0.0	1.0	0.0
CJPDOKKA_12	0.0	1.0	0.0
CJPDOKKA_13	0.0	1.0	0.0
CJPDOKKA_14	0.0	1.0	0.0
CJPDOKKA_15	0.0	1.0	0.0
CJPDOKKA_16	0.0	1.0	0.0
CJPDOKKA_17	0.0	1.0	0.0
CJPDOKKA_18	0.0	1.0	0.0
CJPDOKKA_19	1.0	0.0	1.0
CJPDOKKA_20	0.0	1.0	0.0
CJPDOKKA_21	0.0	1.0	0.0
CJPDOKKA_22	0.0	1.0	0.0
CJPDOKKA_23	0.0	1.0	0.0
CJPDOKKA_24	0.0	1.0	0.0
CJPDOKKA_25	0.0	1.0	0.0
CJPDOKKA_26	0.0	1.0	0.0
CJPDOKKA_27	0.0	1.0	0.0
CJPDOKKA_28	0.0	1.0	0.0
CJPDOKKA_29	1.0	0.0	1.0
CJPDOKKA_30	0.0	1.0	0.0
CJPDOKKA_31	0.0	1.0	0.0
CJPDOKKA_32	1.0	0.0	1.0
CJPDOKKA_33	0.0	1.0	0.0
CJPDOKKA_34	0.0	1.0	0.0
CJPDOKKA_35	1.0	0.0	1.0
CJPDOKKA_36	0.0	1.0	0.0
CJPDOKKA_37	1.0	0.0	1.0
CJPDOKKA_38	0.0	1.0	0.0
CJPDOKKA_39	0.0	1.0	0.0
CJPDOKKA_40	1.0	0.0	1.0
CJPDOKKA_41	0.0	1.0	0.0
CJPDOKKA_42	1.0	0.0	1.0
CJPDOKKA_43	1.0	0.0	1.0
CJPDOKKA_44	0.0	1.0	0.0
CJPDOKKA_45	0.0	1.0	0.0
CJPDOKKA_46	1.0	0.0	1.0
CJPDOKKA_56	0.0	1.0	0.0
CJPDOKKA_58	0.0	1.0	0.0
CJPDOKKA_59	0.0	1.0	0.0
CJPDOKKA_60	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
CJPDOKKA_12	607124	610922	False	Myoviridae	VOG4552,

Phigaro v2.4.0 (Database: Jan. 2024 release)