Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAOFLILF_1 | 370465 | 371199 | ErmG | ARO:3000522 | ErmG | 98.77 | 100.00 | L42817.1 |
| OAOFLILF_34 | 62550 | 63440 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| OAOFLILF_19 | 49687 | 50880 | tet(Q) | ARO:3000191 | tet(Q) | 96.22 | 60.43 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OAOFLILF_1 | 370465 | 371199 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| OAOFLILF_19 | 49687 | 50882 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.83 | 62.10 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OAOFLILF_34 | 62550 | 63437 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| OAOFLILF_1 | 370468 | 371199 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_063844791.1 |
| OAOFLILF_19 | 49690 | 50880 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.50 | 61.93 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OAOFLILF_1 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_2 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_3 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_4 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_5 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_6 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_7 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_8 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_9 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_10 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_11 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_12 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_13 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_14 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_15 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_16 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_17 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_18 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_19 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_20 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_21 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_22 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_23 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_24 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_25 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_26 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_27 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_28 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_29 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_30 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_31 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_32 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_33 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_34 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_35 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_36 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_38 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_39 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_40 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_41 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_42 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_43 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_44 | 1.0 | 0.0 | 1.0 |
| OAOFLILF_45 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_46 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_47 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_51 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_52 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_53 | 0.0 | 1.0 | 0.0 |
| OAOFLILF_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OAOFLILF_12 | 319190 | 330370 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)