Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJOMJNJP_10 | 97029 | 98954 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| DJOMJNJP_54 | 19521 | 20378 | ErmF | ARO:3000498 | ErmF | 98.50 | 107.14 | M17124.1 |
| DJOMJNJP_54 | 17309 | 19234 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DJOMJNJP_10 | 97029 | 98954 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DJOMJNJP_54 | 19521 | 20321 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DJOMJNJP_10 | 97032 | 98954 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DJOMJNJP_54 | 19524 | 20321 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DJOMJNJP_54 | 17312 | 19234 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DJOMJNJP_74 | 875 | 1455 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DJOMJNJP_1 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_2 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_3 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_4 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_5 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_6 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_7 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_8 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_9 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_10 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_11 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_12 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_13 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_14 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_15 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_16 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_17 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_18 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_19 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_20 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_21 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_22 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_23 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_24 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_25 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_26 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_27 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_28 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_29 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_30 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_31 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_32 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_33 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_34 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_35 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_36 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_37 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_38 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_39 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_40 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_41 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_42 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_43 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_44 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_45 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_46 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_47 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_48 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_49 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_50 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_51 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_52 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_53 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_54 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_55 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_56 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_57 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_58 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_59 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_60 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_61 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_62 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_63 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_64 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_65 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_66 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_67 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_68 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_69 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_70 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_71 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_72 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_73 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_74 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_75 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_76 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_77 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_78 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_79 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_80 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_81 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_82 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_84 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_85 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_86 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_87 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_88 | 1.0 | 0.0 | 1.0 |
| DJOMJNJP_89 | 0.0 | 1.0 | 0.0 |
| DJOMJNJP_90 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DJOMJNJP_23 | 224182 | 234778 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)