Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDJELPHP_12 | 33343 | 35268 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| DDJELPHP_29 | 1161 | 1961 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| DDJELPHP_29 | 62 | 886 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDJELPHP_29 | 62 | 886 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| DDJELPHP_12 | 33343 | 35268 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DDJELPHP_29 | 1161 | 1961 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDJELPHP_29 | 62 | 883 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| DDJELPHP_12 | 33346 | 35268 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DDJELPHP_29 | 1164 | 1961 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDJELPHP_34 | 217488 | 219068 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DDJELPHP_25 | 2192 | 2772 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDJELPHP_1 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_2 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_3 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_4 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_5 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_6 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_7 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_8 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_9 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_10 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_11 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_12 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_13 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_14 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_15 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_16 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_17 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_18 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_19 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_20 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_21 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_22 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_23 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_24 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_25 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_26 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_27 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_28 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_29 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_30 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_31 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_32 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_33 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_34 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_35 | 1.0 | 0.0 | 1.0 |
| DDJELPHP_45 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_48 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_49 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_50 | 0.0 | 1.0 | 0.0 |
| DDJELPHP_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDJELPHP_1 | 244874 | 249094 | False | Myoviridae | VOG0572, |
| DDJELPHP_23 | 283605 | 289528 | False | Unknown | VOG4609, |
| DDJELPHP_23 | 453754 | 462624 | False | Siphoviridae | VOG6280, |
| DDJELPHP_49 | 155037 | 165775 | False | Siphoviridae | VOG0327, |
Phigaro v2.4.0 (Database: Jan. 2024 release)