Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPOLBPFM_32 | 29281 | 31206 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| CPOLBPFM_31 | 27221 | 28021 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPOLBPFM_7 | 76706 | 77572 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| CPOLBPFM_31 | 27221 | 28021 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| CPOLBPFM_32 | 29281 | 31206 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPOLBPFM_7 | 75780 | 76553 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| CPOLBPFM_7 | 76706 | 77569 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CPOLBPFM_31 | 27221 | 28018 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CPOLBPFM_32 | 29284 | 31206 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPOLBPFM_1 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_2 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_3 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_4 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_5 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_6 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_7 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_8 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_9 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_10 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_11 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_12 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_13 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_14 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_15 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_16 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_17 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_18 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_19 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_20 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_21 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_22 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_23 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_24 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_25 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_26 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_27 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_28 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_29 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_30 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_31 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_32 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_33 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_34 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_35 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_36 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_37 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_38 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_39 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_40 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_41 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_42 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_43 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_44 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_45 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_46 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_47 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_48 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_49 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_51 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_52 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_53 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_54 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_56 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_57 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_58 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_59 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_60 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_61 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_62 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_63 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_64 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_65 | 1.0 | 0.0 | 1.0 |
| CPOLBPFM_66 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_67 | 0.0 | 1.0 | 0.0 |
| CPOLBPFM_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPOLBPFM_8 | 86902 | 92163 | False | Unknown | VOG4755, |
| CPOLBPFM_25 | 13200 | 20744 | False | Siphoviridae | VOG7238, |
| CPOLBPFM_34 | 140527 | 152876 | False | Unknown | VOG1198, |
| CPOLBPFM_67 | 91739 | 97988 | True | Unknown | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)