Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPHJGJJ_1 | 724231 | 725121 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| LCPHJGJJ_16 | 24148 | 26122 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCPHJGJJ_16 | 24196 | 26121 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LCPHJGJJ_12 | 364019 | 364815 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.59 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPHJGJJ_16 | 24196 | 26118 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LCPHJGJJ_1 | 724231 | 725118 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| LCPHJGJJ_12 | 364019 | 364816 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 90.23 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LCPHJGJJ_39 | 2192 | 2772 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCPHJGJJ_1 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_2 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_3 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_4 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_5 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_6 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_7 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_8 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_9 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_10 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_11 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_12 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_13 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_14 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_15 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_16 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_17 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_18 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_19 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_20 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_21 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_22 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_23 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_24 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_25 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_26 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_27 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_28 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_29 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_30 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_31 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_32 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_33 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_34 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_35 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_36 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_37 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_38 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_39 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_40 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_42 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_43 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_44 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_45 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_46 | 1.0 | 0.0 | 1.0 |
| LCPHJGJJ_47 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_48 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_49 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_50 | 0.0 | 1.0 | 0.0 |
| LCPHJGJJ_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCPHJGJJ_13 | 69061 | 71507 | True | Unknown | VOG4573, |
| LCPHJGJJ_23 | 27915 | 38067 | False | Siphoviridae | VOG9702, |
| LCPHJGJJ_49 | 56648 | 65060 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)