Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHNKPKAA_1 | 450210 | 451175 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DHNKPKAA_37 | 19440 | 20576 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| DHNKPKAA_37 | 18427 | 19227 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| DHNKPKAA_19 | 6563 | 8488 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DHNKPKAA_37 | 18427 | 19227 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| DHNKPKAA_1 | 450210 | 451175 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DHNKPKAA_1 | 450210 | 451175 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DHNKPKAA_1 | 450210 | 451175 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DHNKPKAA_1 | 450210 | 451175 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| DHNKPKAA_37 | 19440 | 20606 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| DHNKPKAA_19 | 6563 | 8488 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHNKPKAA_1 | 450210 | 451172 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DHNKPKAA_37 | 18427 | 19224 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| DHNKPKAA_37 | 19443 | 20606 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| DHNKPKAA_19 | 6566 | 8488 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHNKPKAA_31 | 31583 | 33163 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHNKPKAA_1 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_2 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_3 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_4 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_5 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_6 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_7 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_8 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_9 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_10 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_11 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_12 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_13 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_14 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_15 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_16 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_17 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_18 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_19 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_20 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_21 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_22 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_23 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_24 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_25 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_26 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_27 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_28 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_29 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_30 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_31 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_32 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_33 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_34 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_35 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_36 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_37 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_38 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_39 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_40 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_41 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_42 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_43 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_44 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_45 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_46 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_47 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_48 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_49 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_50 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_51 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_52 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_53 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_54 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_55 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_56 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_57 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_58 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_59 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_60 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_61 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_62 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_63 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_64 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_65 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_66 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_67 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_68 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_69 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_70 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_71 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_72 | 1.0 | 0.0 | 1.0 |
| DHNKPKAA_78 | 0.0 | 1.0 | 0.0 |
| DHNKPKAA_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)