Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKOPBDMG_13 | 63495 | 64310 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| KKOPBDMG_75 | 514 | 1377 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| KKOPBDMG_54 | 3 | 1571 | tet(Q) | ARO:3000191 | tet(Q) | 96.03 | 79.60 | Z21523.1 |
| KKOPBDMG_74 | 2 | 1681 | tet(Q) | ARO:3000191 | tet(Q) | 96.43 | 85.24 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KKOPBDMG_13 | 63495 | 64310 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| KKOPBDMG_45 | 123755 | 124551 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKOPBDMG_75 | 514 | 1374 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| KKOPBDMG_13 | 63495 | 64307 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| KKOPBDMG_54 | 3 | 1439 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.37 | 74.73 | WP_063856407.1 |
| KKOPBDMG_74 | 2 | 1687 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 96.80 | 85.18 | WP_002560998.1 |
| KKOPBDMG_45 | 123755 | 124552 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KKOPBDMG_67 | 77802 | 76222 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KKOPBDMG_71 | 339 | 1018 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KKOPBDMG_1 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_2 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_3 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_4 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_5 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_6 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_7 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_8 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_9 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_10 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_11 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_12 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_13 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_14 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_15 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_16 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_17 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_18 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_19 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_20 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_21 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_22 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_23 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_24 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_25 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_26 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_27 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_28 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_29 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_30 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_31 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_32 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_33 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_34 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_35 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_36 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_37 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_38 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_39 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_40 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_41 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_42 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_43 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_44 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_45 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_46 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_47 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_48 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_49 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_50 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_51 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_52 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_53 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_54 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_55 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_56 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_57 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_58 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_59 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_60 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_61 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_62 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_63 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_64 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_65 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_66 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_67 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_68 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_70 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_71 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_72 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_73 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_74 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_75 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_76 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_77 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_78 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_79 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_80 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_81 | 0.0 | 1.0 | 0.0 |
| KKOPBDMG_82 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_83 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_84 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_85 | 1.0 | 0.0 | 1.0 |
| KKOPBDMG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KKOPBDMG_3 | 55272 | 66010 | False | Siphoviridae | VOG0327, |
| KKOPBDMG_23 | 203895 | 216527 | False | Siphoviridae | VOG0189, |
| KKOPBDMG_34 | 34848 | 43296 | False | Siphoviridae | VOG7238, |
| KKOPBDMG_34 | 91414 | 95634 | False | Myoviridae | VOG4552, |
Phigaro v2.4.0 (Database: Jan. 2024 release)