Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 1 | 0 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFDGLHPD_51 | 224675 | 225880 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LFDGLHPD_51 | 58110 | 59012 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
| LFDGLHPD_2 | 27335 | 28198 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LFDGLHPD_2 | 26023 | 27159 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| LFDGLHPD_2 | 24685 | 25824 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LFDGLHPD_2 | 23579 | 24379 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| LFDGLHPD_2 | 7658 | 9583 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFDGLHPD_2 | 7658 | 9583 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| LFDGLHPD_2 | 23579 | 24379 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LFDGLHPD_2 | 25993 | 27159 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| LFDGLHPD_51 | 58110 | 59012 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFDGLHPD_2 | 27335 | 28195 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LFDGLHPD_51 | 225905 | 226414 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LFDGLHPD_2 | 7661 | 9583 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| LFDGLHPD_2 | 25993 | 27156 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LFDGLHPD_2 | 24685 | 25821 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LFDGLHPD_2 | 23582 | 24379 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LFDGLHPD_51 | 224675 | 225877 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LFDGLHPD_51 | 58113 | 59012 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LFDGLHPD_53 | 59911 | 61104 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| LFDGLHPD_53 | 59911 | 61104 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| LFDGLHPD_53 | 59911 | 61104 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFDGLHPD_1 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_2 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_3 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_4 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_5 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_6 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_7 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_8 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_9 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_10 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_11 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_12 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_13 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_14 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_15 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_16 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_17 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_18 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_19 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_20 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_21 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_22 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_23 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_24 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_25 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_26 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_27 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_28 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_29 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_30 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_31 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_32 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_33 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_34 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_35 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_36 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_37 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_38 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_39 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_40 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_41 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_42 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_43 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_44 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_45 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_46 | 1.0 | 0.0 | 1.0 |
| LFDGLHPD_50 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_51 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_52 | 0.0 | 1.0 | 0.0 |
| LFDGLHPD_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)